Nanopore sequencing preprints

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Theme editors: Lachlan Coin , Devika Ganesamoorthy

Preprint Authors Date Reviews & Comments Intersect Actions
Shedding light on biogas: a transparent reactor triggers the development of a biofilm dominated by Rhodopseudomonas faecalis that holds potential for improved biogas production 17th Jan 2019
Annotated bacterial chromosomes from frame-shift-corrected long read metagenomic data 5th Jan 2019
Nanopore metagenomic sequencing of full length human metapneumovirus (HMPV) within a unique sub-lineage Dec 2018
Generating closed bacterial genomes from long-read nanopore sequencing of microbiomes Dec 2018
The genomic and proteomic landscape of the rumen microbiome revealed by comprehensive genome-resolved metagenomics Dec 2018
Ultra-deep, long-read nanopore sequencing of mock microbial community standards Dec 2018
genome_assembly Bookmark
NanoARG: A web service for identification of antimicrobial resistance elements from nanopore-derived environmental metagenomes Nov 2018
antibiotic_resistance Bookmark
Long read-based de novo assembly of low complex metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system Nov 2018
crispr genome_assembly methylation Bookmark
Rapid Diagnosis of Capnocytophaga canimorsus Septic Shock in an Immunocompetent Individual Using Real-Time Nanopore Sequencing Nov 2018
sepsis streaming Bookmark
Improving recovery of member genomes from enrichment reactor microbial communities using MinION--based long read metagenomics Nov 2018
Nanopore sequencing enables high-resolution analysis of resistance determinants and mobile elements in the human gut microbiome Nov 2018
antibiotic_resistance Bookmark
Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and whole rrn operon Oct 2018
Lineage calling can identify antibiotic resistant clones within minutes Aug 2018
antibiotic_resistance Bookmark
Rapid Diagnosis of Lower Respiratory Infection using Nanopore-based Clinical Metagenomics T. Charalampous...
J. O'Grady
Aug 2018
Nanopore-based DNA sequencing in clinical microbiology: preliminary assessment of basic requirements H. Harstad, R. Ahmad, A. Bredberg Aug 2018
antibiotic_resistance tuberculosis Bookmark
Recentrifuge: robust comparative analysis and contamination removal for metagenomics J. M. Marti, Jul 2018
An analysis of current state of the art software on nanopore metagenomic data S. C. Pendleton Mar 2018
Liquid co-substrates repower sewage microbiomes J. Hardegen...
C. Abendroth
Feb 2018
NanoAmpli-Seq: A workflow for amplicon sequencing from mixed microbial communities on the nanopore sequencing platform S. T. Calus...
A. J. Pinto
Jan 2018 Reviews
MEGAN-LR: New algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs D. Huson...
R. B. H. Williams
Nov 2017