Nanopore sequencing preprints

See other preprint channels in Genomics.

Register as an editor for this theme. See keywords used to identify matching preprints

If you believe a preprint is missing from this list it is possible that we have not yet indexed it. Please use search function to help us index it.


Theme editors: Devika Ganesamoorthy , Lachlan Coin


Preprint Authors Date Reviews & Comments Intersect Actions
Pan-genomic and Polymorphic Driven Prediction of Antibiotic Resistance in Elizabethkingia 19th Apr 2019
antibiotic_resistance Bookmark
Shallow metagenomics with Nanopore sequencing in canine fecal microbiota improved bacterial taxonomy and identified an uncultured CrAssphage 22nd Mar 2019
metagenomics Bookmark
Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology 23rd Feb 2019
antibiotic_resistance Bookmark
Hybrid genome assembly and annotation of Danionella translucida, a transparent fish with the smallest known vertebrate brain 5th Feb 2019
rnaseq Bookmark
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes 28th Jan 2019
antibiotic_resistance Bookmark
De novo genome assembly of the olive fruit fly (Bactrocera oleae) developed through a combination of linked-reads and long-read technologies Dec 2018
linked_reads Bookmark
Nanopore sequencing significantly improves genome assembly of the eukaryotic protozoan parasite Trypanosoma cruzi Dec 2018
Bookmark
Ultra-deep, long-read nanopore sequencing of mock microbial community standards Dec 2018
metagenomics Bookmark
Shallow MinION sequencing to assist de novo assembly of the Streptococcus agalactiae genome Dec 2018
Bookmark
Long read-based de novo assembly of low complex metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system Nov 2018
crispr metagenomics methylation Bookmark
MiniScrub: de novo long read scrubbing using approximate alignment and deep learning Oct 2018
Bookmark
poreTally: run and publish de novo Nanopore assembler benchmarks Sep 2018
Bookmark
Nanopore sequence-based genome assembly of the basmati rice Aug 2018
Bookmark
Genomic Surveillance for Antimicrobial Resistance in Mannheimia haemolytica Using Nanopore Single Molecule Sequencing Technology Aug 2018
antibiotic_resistance Bookmark
Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing S. Goldstein...
J. Klassen
Jul 2018
Bookmark
A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping S. Deschamps...
H. Lin
May 2018
bionano Bookmark
Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case W. Wang...
R. Lanfear
May 2018
Bookmark
Fusobacterium genomics using MinION and Illumina sequencing enables genome completion and correction S. M. Todd...
D. J. Slade
Apr 2018
Bookmark
Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats M. Schmid...
C. H. Ahrens
Apr 2018
Bookmark
MinION sequencing enables rapid whole genome assembly of Rickettsia typhi in a resource-limited setting I. Elliott...
E. M. Batty
Mar 2018
Bookmark