Metagenomics intersected with Nanopore preprints

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Preprint Authors Date Reviews & Comments Intersect Actions
Shallow metagenomics with Nanopore sequencing in canine fecal microbiota improved bacterial taxonomy and identified an uncultured CrAssphage 22nd Mar 2019
genome_assembly Bookmark
Application of cell-free DNA sequencing in characterization of bloodborne microbes and the study of microbe-disease interactions 16th Mar 2019
cell_free_dna Bookmark
Title - Taxonomic survey of Anadenobolus monilicornis gut microbiota via shotgun nanopore sequencing 1st Mar 2019
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Semi-quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet) 16th Feb 2019
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Shedding light on biogas: a transparent reactor triggers the development of a biofilm dominated by Rhodopseudomonas faecalis that holds potential for improved biogas production 17th Jan 2019
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Annotated bacterial chromosomes from frame-shift-corrected long read metagenomic data 5th Jan 2019
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Nanopore metagenomic sequencing of full length human metapneumovirus (HMPV) within a unique sub-lineage Dec 2018
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Generating closed bacterial genomes from long-read nanopore sequencing of microbiomes Dec 2018
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The genomic and proteomic landscape of the rumen microbiome revealed by comprehensive genome-resolved metagenomics Dec 2018
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Ultra-deep, long-read nanopore sequencing of mock microbial community standards Dec 2018
genome_assembly Bookmark
NanoARG: A web service for identification of antimicrobial resistance elements from nanopore-derived environmental metagenomes Nov 2018
antibiotic_resistance Bookmark
Long read-based de novo assembly of low complex metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system Nov 2018
crispr genome_assembly methylation Bookmark
Rapid Diagnosis of Capnocytophaga canimorsus Septic Shock in an Immunocompetent Individual Using Real-Time Nanopore Sequencing Nov 2018
sepsis streaming Bookmark
Improving recovery of member genomes from enrichment reactor microbial communities using MinION--based long read metagenomics Nov 2018
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Nanopore sequencing enables high-resolution analysis of resistance determinants and mobile elements in the human gut microbiome Nov 2018
antibiotic_resistance Bookmark
Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and whole rrn operon Oct 2018
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Lineage calling can identify antibiotic resistant clones within minutes Aug 2018
antibiotic_resistance Bookmark
Rapid Diagnosis of Lower Respiratory Infection using Nanopore-based Clinical Metagenomics T. Charalampous...
J. O'Grady
Aug 2018
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Nanopore-based DNA sequencing in clinical microbiology: preliminary assessment of basic requirements H. Harstad, R. Ahmad, A. Bredberg Aug 2018
antibiotic_resistance tuberculosis Bookmark
Recentrifuge: robust comparative analysis and contamination removal for metagenomics J. M. Marti, Jul 2018
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