See other preprint channels in Genomics.
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|Preprint||Authors||Date||Reviews & Comments||Intersect||Actions|
|Shallow metagenomics with Nanopore sequencing in canine fecal microbiota improved bacterial taxonomy and identified an uncultured CrAssphage||22nd Mar 2019||nanopore||Bookmark|
|MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies||8th Feb 2019||Bookmark|
|Optimizing de novo genome assembly from PCR-amplified metagenomes||Dec 2018||Bookmark|
|Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation||Dec 2018||antibiotic_resistance||Bookmark|
|Ultra-deep, long-read nanopore sequencing of mock microbial community standards||Dec 2018||nanopore||Bookmark|
|Choice of assembly software has a critical impact on virome characterisation||Nov 2018||Bookmark|
|Long read-based de novo assembly of low complex metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system||Nov 2018||crispr methylation nanopore||Bookmark|
|New approaches for assembly of short-read metagenomic data||Nov 2018||Bookmark|
|Exploring neighborhoods in large metagenome assembly graphs reveals hidden sequence diversity||Nov 2018||Bookmark|
|deGSM: memory scalable construction of large scale de Bruijn Graph||Aug 2018||burrowswheeler_transform||Bookmark|
|Bacterial and fungal contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing||Aug 2018||Bookmark|
|Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes||M. R. Olm...
J. F. Banfield
|Functional Analysis of Metagenomes by Likelihood Inference (FAMLI) Successfully Compensates for Multi-Mapping Short Reads from Metagenomic Samples||J. L. Golob, S. S. Minot||Apr 2018||recombination||Bookmark|
|Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes||J. Alneberg...
|MetaCompass: Reference-guided Assembly of Metagenomes||V. Cepeda...
|Abundance-based reconstitution of microbial pan-genomes from whole-metagenome shotgun sequencing data||F. P. Oñate...
|Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants||S. Awad...
C. T. Brown
|Gut Microbiota Composition Related With Clostridium difficile-Positive Diarrhea And C. Difficile Type (A+B+, A-B+, And A-B-) In ICU Hospitalized Patients||A. Wu...
|Faucet: streaming de novo assembly graph construction||R. Rozov...
|De novo assembly of microbial genomes from human gut metagenomes using barcoded short read sequences||E. Moss...
A. S. Bhatt
|Apr 2017||antibiotic_resistance rnaseq||Bookmark|