Genome assembly preprints

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Preprint Authors Date Reviews & Comments Actions
High-quality genome assemblies of 15 Drosophila species generated using Nanopore sequencing D. E. Miller...
R. S. Hawley
18th Feb 2018
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ReadFilter - Filtering reads of interest for quicker downstream analysis K. L. Ng...
M. Stegger
15th Feb 2018
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Hybrid de novo assembly of the draft genome of the freshwater mussel Venustaconcha ellipsiformis (Bivalvia: Unionida). S. Renaut...
S. Breton
15th Feb 2018
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The Aquilegia genome: adaptive radiation and an extraordinarily polymorphic chromosome with a unique history D. Filiault...
M. Nordborg
12th Feb 2018
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Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs. A. Limasset, P. P. . J. Flot 9th Feb 2018
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First nuclear genome assembly of an extinct moa species, the little bush moa (Anomalopteryx didiformis) A. Cloutier...
A. J. Baker
9th Feb 2018
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Integrating Hi-C links with assembly graphs for chromosome-scale assembly J. Ghurye...
S. Koren
7th Feb 2018
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Proteomics as a metrological tool to evaluate genome annotation accuracy following de novo genome assembly: a case study using the Atlantic bottlenose dolphin (Tursiops truncatus) B. A. Neely, D. L. Ellisor, W. C. Davis 2nd Feb 2018
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Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements T. Andermann...
A. Antonelli
29th Jan 2018
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The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000 O. Dudchenko...
E. L. Aiden
28th Jan 2018
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Whole-genome resequencing and pan-transcriptome reconstruction highlight the impact of genomic structural variation on secondary metabolism gene clusters in the grapevine Esca pathogen Phaeoacremonium minimum M. Massonnet...
D. Cantu
23rd Jan 2018
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Scalable De Novo Genome Assembly Using Pregel. D. Yan, J. C. . H. C. . Z. C. . B. Shao 16th Jan 2018
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Assembly of Long Error-Prone Reads Using Repeat Graphs M. Kolmogorov...
P. Pevzner
12th Jan 2018
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Whole body transcriptomes and new insights into the biology of the tick Ixodes ricinus P. N. Charrier...
C. Rispe
9th Jan 2018
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Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control B. J. Matthews...
Sha
Dec 2017
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DeepSimulator: a deep simulator for Nanopore sequencing Y. Li...
X. Gao
Dec 2017
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The structure of the influenza A virus genome B. Dadonaite...
D. L. Bauer
Dec 2017
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Leishmania naiffi and Leishmania guyanensis reference genomes highlight genome structure and gene content evolution in the Viannia subgenus S. Coughlan...
T. Downing
Dec 2017
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Hercules: a profile HMM-based hybrid error correction algorithm for long reads C. Firtina...
A. E. Cicek
Dec 2017
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Accelerating K-mer Frequency Counting with GPU and Non-Volatile Memory. N. Cadenelli, D. C. . J. Polo Dec 2017
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