Genome assembly preprints

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Preprint Authors Date Reviews & Comments Actions
High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena) M. Autenrieth...
R. Tiedemann
18th Apr 2018
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Sequencing and de novo assembly reveals genomic variations associated with differential responses of Candida albicans ATCC 10231 towards fluconazole, pH and non-invasive growth G. Zore...
B. Balan
17th Apr 2018
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Identification of Significant Computational Building Blocks through Comprehensive Deep Dive of NGS Secondary Analysis Methods M. Vasimuddin...
S. Aluru
16th Apr 2018
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Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats M. Schmid...
C. H. Ahrens
12th Apr 2018
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Functional Analysis of Metagenomes by Likelihood Inference (FAMLI) Successfully Compensates for Multi-Mapping Short Reads from Metagenomic Samples J. L. Golob, S. S. Minot 5th Apr 2018
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Stability of local secondary structure determines selectivity of viral RNA chaperones J. P. K. Bravo...
R. Tuma
3rd Apr 2018
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An ultra-dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce (Picea abies) C. Bernhardsson...
P. K. Ingvarsson
30th Mar 2018
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MinION sequencing enables rapid whole genome assembly of Rickettsia typhi in a resource-limited setting I. Elliott...
E. M. Batty
30th Mar 2018
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Design and evaluation of a large sequence-capture probe set and associated SNPs for diploid and haploid samples of Norway spruce (Picea abies) A. Vidalis...
P. Ingvarsson
29th Mar 2018
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Graph Peak Caller: calling ChIP-Seq Peaks on Graph-based Reference Genomes I. Grytten...
G. K. Sandve
23rd Mar 2018
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Purge Haplotigs: Synteny Reduction for Third-gen Diploid Genome Assemblies M. J. Roach, S. A. Schmidt, A. R. Borneman 22nd Mar 2018
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Repeat-driven generation of antigenic diversity in a major human pathogen, Trypanosoma cruzi C. Talavera-Lopez...
B. Andersson
16th Mar 2018
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De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome R. Huerlimann...
D. R. Jerry
14th Mar 2018
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Embryonic gene transcription in the spiny mouse (Acomys cahirinus): a new model of embryonic genome activation. J. Mamrot...
H. Dickinson
12th Mar 2018
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Expanding an expanded genome: long-read sequencing of Trypanosoma cruzi L. BernĂ¡...
C. Robello
10th Mar 2018
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GetOrganelle: a simple and fast pipeline for de novo assembly of a complete circular chloroplast genome using genome skimming data J. Jin...
D. Li
9th Mar 2018
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Telomere-loop dynamics in chromosome end protection D. V. Ly...
A. J. Cesare
9th Mar 2018
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Finding Nemo's Genes: A chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula R. Lehmann...
T. Ravasi
7th Mar 2018
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Evolutionary analysis of chromosome end extension H. Shao...
L. J. . Coin
7th Mar 2018
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A dense linkage map of Lake Victoria cichlids improved the Pundamilia genome assembly and revealed a major QTL for sex-determination P. G. D. Feulner...
O. Seehausen
2nd Mar 2018
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